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Research Interests
The research in my group focuses on understanding dynamical and structural
properties of classical and quantum systems in the condensed phase with
particular interest in biological problems.
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Mannose dimmers bound to the high and low affinity
binding pockets of cyanovirin.
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bmim-pf6, ionic organic solvent.
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We use theoretical and computational tools to look at properties
of proteins and ligands in solution. In particular we
are interested in the interaction of lectins with their
corresponding binding sugars.
This is extremely important due to the role that sugars
play in recognition and defense against viral and bacterial
attack.
As an example cyanovirin (a potent HIV inhibitor protein)
binds with high affinity to mannose dimmers on the surface of the
HIV virus.
We are also interested in a group of novel organic solvents
called "green
chemistry room temperature ionic liquids". These solvents can be used as
media for organic reactions. As opposed to most organic solvents, ionic liquids
are not volatile and therefore are ideally suited for recycling. These new liquids
are also very interesting for their potential use as battery electrolytes, liquid
crystals, and glassy material.
Another area in which my group is interested is the modeling of excited state
potential energy surfaces and the electronic coupling between them. This is very
important because it allows us to address problems such as non-radiative electronic
transitions that are induced by the presence of solvent around excited state
molecules and radicals. We are also interested in quasi-classical methods of
propagation of the equations of motion for these excited state systems.
Because we are usually dealing with complex many-body problems the tools of statistical
mechanics and state-of-the-art computational methods are necessary. We use molecular
dynamics, Monte Carlo techniques and other computational tools to obtain atomistic
information about the systems studied.
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